MRIQC: individual T1w report

Summary

Subject ID: 054_ControlPre.
Date and time: 2018-05-06, 21:58.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.29802447720614617
cnr			4.258169317773265
efc			0.5840881990335695
fber			108.50336456298828
fwhm	avg		3.83271
fwhm	x		3.71774
fwhm	y		4.04502
fwhm	z		3.73537
icvs	csf		0.2147608600797538
icvs	gm		0.4407759945482638
icvs	wm		0.34446314537198236
inu	med		0.8803324699401855
inu	range		0.28962653875350963
qi	1		0.0
qi	2		0.0007811425762647462
rpve	csf		23.82447873142694
rpve	gm		12.485399152208839
rpve	wm		19.05802305894522
size	x		180
size	y		256
size	z		256
snr	csf		2.836738740154159
snr	gm		10.778999911383453
snr	total		11.681081116257019
snr	wm		21.42750469723345
snrd	csf		15.231650020442574
snrd	gm		30.26960178005337
snrd	total		30.354757675378824
snrd	wm		45.563021225640526
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.4167208931150332
summary	bg	mad	14.378907203674316
summary	bg	mean	52.955318450927734
summary	bg	median	51.33439636230469
summary	bg	n	3017655.0
summary	bg	p05	31.37257442474365
summary	bg	p95	80.1854438781738
summary	bg	stdv	15.394749641418457
summary	csf	k	-0.006846406096665092
summary	csf	mad	127.16454315185547
summary	csf	mean	336.9818115234375
summary	csf	median	334.30364990234375
summary	csf	n	14983.0
summary	csf	p05	155.46237335205078
summary	csf	p95	529.8389526367187
summary	csf	stdv	117.84394836425781
summary	gm	k	0.45654389225254155
summary	gm	mad	57.629966735839844
summary	gm	mean	665.4104614257812
summary	gm	median	664.3560180664062
summary	gm	n	33300.0
summary	gm	p05	566.3446716308594
summary	gm	p95	770.0757415771484
summary	gm	stdv	61.633365631103516
summary	wm	k	1.1478297690281476
summary	wm	mad	42.40473937988281
summary	wm	mean	1000.0614624023438
summary	wm	median	1000.015380859375
summary	wm	n	186190.0
summary	wm	p05	924.119351196289
summary	wm	p95	1075.4337158203125
summary	wm	stdv	46.66958236694336
tpm	overlap	csf	0.210318922996521
tpm	overlap	gm	0.5183640122413635
tpm	overlap	wm	0.5361310243606567
wm2max			0.7053870808992876

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	cb7edc70c4d4a02355d78425e74e3b83
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.