MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.29802447720614617
cnr4.258169317773265
efc0.5840881990335695
fber108.50336456298828
fwhmavg3.83271
fwhmx3.71774
fwhmy4.04502
fwhmz3.73537
icvscsf0.2147608600797538
icvsgm0.4407759945482638
icvswm0.34446314537198236
inumed0.8803324699401855
inurange0.28962653875350963
qi10.0
qi20.0007811425762647462
rpvecsf23.82447873142694
rpvegm12.485399152208839
rpvewm19.05802305894522
sizex180
sizey256
sizez256
snrcsf2.836738740154159
snrgm10.778999911383453
snrtotal11.681081116257019
snrwm21.42750469723345
snrdcsf15.231650020442574
snrdgm30.26960178005337
snrdtotal30.354757675378824
snrdwm45.563021225640526
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.4167208931150332
summarybgmad14.378907203674316
summarybgmean52.955318450927734
summarybgmedian51.33439636230469
summarybgn3017655.0
summarybgp0531.37257442474365
summarybgp9580.1854438781738
summarybgstdv15.394749641418457
summarycsfk-0.006846406096665092
summarycsfmad127.16454315185547
summarycsfmean336.9818115234375
summarycsfmedian334.30364990234375
summarycsfn14983.0
summarycsfp05155.46237335205078
summarycsfp95529.8389526367187
summarycsfstdv117.84394836425781
summarygmk0.45654389225254155
summarygmmad57.629966735839844
summarygmmean665.4104614257812
summarygmmedian664.3560180664062
summarygmn33300.0
summarygmp05566.3446716308594
summarygmp95770.0757415771484
summarygmstdv61.633365631103516
summarywmk1.1478297690281476
summarywmmad42.40473937988281
summarywmmean1000.0614624023438
summarywmmedian1000.015380859375
summarywmn186190.0
summarywmp05924.119351196289
summarywmp951075.4337158203125
summarywmstdv46.66958236694336
tpmoverlapcsf0.210318922996521
tpmoverlapgm0.5183640122413635
tpmoverlapwm0.5361310243606567
wm2max0.7053870808992876

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sumcb7edc70c4d4a02355d78425e74e3b83
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.